Home » Tools » GWAS tools and software » aSPU

aSPU

aSPU is a tool to test association of gene- and pathway-trait in genome-wide association study (GWAS) summary data.

Topic

Genetics; Experimental design and studies; GWAS study

Details

Operation: Pathway or network analysis; Statistical calculation
Software interface: Command-line user interface; Library
Language: R
Operating system: Linux; Mac OS X; Microsoft Windows
License: GNU General Public License v3

Cost

Version name: 1.48

Maturity:

Credit: National Institutes of Health (NIH), the Minnesota Supercomputing Institute at the University of Minnesota.
Contact: Il-Youp Kwak ikwak at umn.edu
Collection: -

Publications

Kwak IY, Pan W "Adaptive gene- and pathway-trait association testing with GWAS summary statistics." Bioinformatics 2016; 32(8):1178-84 https://doi.org/10.1093/bioinformatics/btv719
PMID: 26656570
PMCID: PMC5860182

Download and documentation

Source: https://cran.r-project.org/web/packages/
aSPU/
Documentation: https://cran.r-project.org/web/packages/
aSPU/aSPU.pdf
Home page: https://cran.r-project.org/web/packages/
aSPU/

If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News

TOOLS

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched

Database of Bioinformatics Software Tools and Resources.

Ads