Home » Tools » GWAS tools and software » cit

cit

cit is a tool to test hypotheses mediation analysis. It uses the causal inference test (CIT) based on hypothesis testing.

Topic

Statistics and probability; Phenomics; GWAS study

Details

Operation: Sequence alignment analysis (site correlation)
Software interface: Command-line user interface
Language: R
Operating system: Mac OS X; Microsoft Windows
License: Artistic-2.0

Cost

Version name: 2.2

Maturity:

Credit: The National Institutes of Health (NIH).
Contact: Joshua Millstein joshua.millstein _at_ usc.edu
Collection: -

Publications

Millstein J, Chen GK, Breton CV "cit: hypothesis testing software for mediation analysis in genomic applications." Bioinformatics. 2016 Aug 1;32(15):2364-5. Epub 2016 Mar 9. https://doi.org/10.1093/bioinformatics/btw135
PMID: 27153715
PMCID: PMC4965632

Download and documentation

Source: https://cran.r-project.org/src/contrib/c
it_2.2.tar.gz
Documentation: https://cran.r-project.org/web/packages/
cit/cit.pdf
Home page: https://cran.r-project.org/web/packages/
cit/index.html

If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News

TOOLS

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched

Database of Bioinformatics Software Tools and Resources.

Ads