gPLINK is a GUI tool for the PLINK command-line tool (see links) to perform several main operations. It also makes it possible for the computation itself to be located on another server.
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC "PLINK: a tool set for whole-genome association and population-based linkage analyses." Am. J. Hum. Genet. 2007; 81(3):559-75 https://doi.org/10.1086/519795
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