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iPat (Intelligent Prediction and Association Tool) is a Java tool for genome-wide association studies (GWAS). The graphica user interface allows drag and click specification of input data files, choosing input parameters and selection of models. iPat includes GAPIT, PLINK, FarmCPU, BLINK, rrBLUP and BGLR models.


GWAS study


  • Operation: Statistical modelling
  • Software interface: Graphical user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Emerging Research Issues Internal Competitive Grant from the Agricultural Research Center at Washington State University, College of Agricultural, Human and Natural Resource Sciences, the Washington Grain Commission, Department of Energy, the National Institute of Food and Agriculture, U.S. Department of Agriculture
  • Contact: chun-peng.chen _at_
  • Collection: -


Chen CJ, Zhang Z "iPat: intelligent prediction and association tool for genomic research" Bioinformatics. 2018 Jun 1;34(11):1925-1927
PMID: 29342241

Download and documentation

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