qMSAT (quality-based Multivariate Score Association Test) is a tool for multivariate association testing of rare variants. The qMSAT algorithm weights the scores by sequencing quality values.
Data quality management; GWAS study
Daye ZJ, Li H, Wei Z "A powerful test for multiple rare variants association studies that incorporates sequencing qualities." Nucleic Acids Res. 2012 Apr;40(8):e60. https://doi.org/10.1093/nar/gks024
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