treeWAS is a tool for genome-wide association studies (GWAS) for microbes. The treeWAS algorithm uses a clonal population structure and homologous recombination to increase the precision of the computation.
GWAS study; Phylogenetics; Machine learning
Collins C, Didelot X "A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination." PLoS Comput. Biol. 2018; 14(2):e1005958 https://doi.org/10.1371/journal.pcbi.1005958
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