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wtest

wtest

wtest is a tool for association testing of principal effects, pairwise and high order interactions in genome-wide association study (GWAS) data. The wtest also has functions for genome-wide and epigenome-wide testing of the cis-regulation of SNP and CpG sites.

Topic

Genetics; GWAS study; Protein interactions; DNA

Details

  • Operation: Statistical calculation
  • Software interface: Command-line user interface
  • Language: R, C++
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v2
  • Cost: Free
  • Version name: 3.2
  • Maturity: Stable
  • Credit: NSFC
  • Contact: Rui Sun rsunzju at gmail.com | maggiew _at_ cuhk.edu.hk
  • Collection: -

Publications

Sun R, Xia X, Chong KC, Zee BC, Wu WKK, Wang MH "wtest: an integrated R package for genetic epistasis testing." BMC Med Genomics 12(Suppl 9): 180. https://doi.org/10.1186/S12920-019-0638-9
PMID: 31874630
PMCID: PMC6929460


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