ABHgenotypeR is an R tool for genotype imputation, error correction, and plotting genotype data. The purpose of ABHgenotypeR is to work as an in-between tool for TASSEL GBS pipeline and qtl tool. However, ABHgenotypeR is an independent tool and can visualize genotypes using ggplot2.
ABHgenotypeR is an R tool for genotype imputation, error correction, and plotting genotype data. The purpose of ABHgenotypeR is to work as an in-between tool for TASSEL GBS pipeline and qtl tool. However, ABHgenotypeR is an independent tool and can visualize genotypes using ggplot2.
Credit:
Core Research for Evolutional Science and Technology, the Japan Science and Technology Agency, he Council for Science, Technology and Innovation, Cross-ministerial Strategic Innovation Promotion Program, Technologies for creating next-generation agriculture, forestry and fisheries, Bio-oriented Technology Research Advancement Institution (NARO), National Bio Resource Project (NBRP) “Rice."
Contact:
Stefan Reuscher reuscher.stefan _at_ gmail.com
Collection: -
Publications
Furuta T, Ashikari M, Jena KK, Doi K, Reuscher S "Adapting Genotyping-by-Sequencing for Rice F2 Populations." G3 (Bethesda). 2017 Mar 10;7(3):881-893. https://doi.org/10.1534/g3.116.038190
PMID: 28082325
PMCID: PMC5345719