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A tool for phasing and genotype imputation in plant data. The AlphaPlantImpute algorithm works in and across bi-parental populations. Available from the Author through email. See 'contact'.


Population genetics


  • Operation: Phasing; Imputation
  • Software interface: Command-line user interface
  • Language: -
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Other
  • Cost: Free for non-commercial use
  • Version name: 1.1
  • Maturity: Stable
  • Credit: Biotechnology and Biological Sciences Research Council (BBSRC) ISP, Biotechnology and Biological Sciences Research Council (BBSRC) KWS..
  • Contact: John Hickey john.hickey _at_
  • Collection: -


Gonen S, Wimmer V, Gaynor RC, Byrne E, Gorjanc G, Hickey JM "A heuristic method for fast and accurate phasing and imputation of single-nucleotide polymorphism data in bi-parental plant populations." Theor Appl Genet. 2018 Nov;131(11):2345-2357. Epub 2018 Aug 4.
PMID: 30078163
PMCID: PMC6208939

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