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DrImpute

DrImpute

DrImpute is a tool for the imputation of dropout events in single-cell RNA-seq (sc-RNA-seq) data.

Topic

RNA sequencing; Next generation sequencing

Details

  • Operation: Imputation
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v3
  • Cost: Free
  • Version name: 1.2
  • Maturity: Stable
  • Credit: The University of Minnesota Supercomputing Institute.
  • Contact: Wuming Gong gongx030 _at_ umn.edu
  • Collection: -

Publications

Gong W, Kwak IY, Pota P, Koyano-Nakagawa N, Garry DJ "DrImpute: imputing dropout events in single cell RNA sequencing data." BMC Bioinformatics. 2018 Jun 8;19(1):220. https://doi.org/10.1186/s12859-018-2226-y
PMID: 29884114
PMCID: PMC5994079

Download and documentation

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