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EMINIM

EMINIM

A tool for genotype imputation. The EMINIM algorithm is based on a hidden Markov model (HMM), estimates population parameters from data, and works on diverse model organisms.

Topic

Population genetics

Details

  • Operation: Imputation
  • Software interface: Command-line user interface
  • Language: -
  • Operating system: Linux
  • License: Not stated
  • Cost: Free
  • Version name: 1.0.1
  • Maturity: beta
  • Credit: The National Science Foundation, National Institutes of Health, UCLA subcontract of contract N01-ES-45530 from the National Toxicology Program/National Institute of Environmental Health Sciences to Perlegen Science
  • Contact: Hyun Min Kang h3kang _at_ cs.ucsd.edu
  • Collection: -

Publications

Kang HM, Zaitlen NA, Eskin E "EMINIM: an adaptive and memory-efficient algorithm for genotype imputation." J Comput Biol. 2010 Mar;17(3):547-60. https://doi.org/10.1089/cmb.2009.0199
PMID: 20377463
PMCID: PMC3198882

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