GRIMM

A tool to impute human leukocyte antigen (HLA) genotypes and matching. The GRIMM algorithm uses a graph-based method to store haplotype frequencies.

Topic

Population genetics

Details

Operation: Imputation
Software interface: Command-line user interfacae
Language: Perl, Python
Operating system: Microsoft Windows, Mac OS X, Linux
License: GNU Lesser General Public License version 3

Cost

Version name: -

Maturity:

Credit: US Office of Naval Research
Contact: Yoram Louzoun louzouy _at_ math.biu.ac.il
Collection: -

Publications

Maiers M, Halagan M, Gragert L, Bashyal P, Brelsford J, Schneider J, Lutsker P, Louzoun Y "GRIMM: GRaph IMputation and Matching for HLA Genotypes." Bioinformatics. 2019 Jan 28. pii: 5303534. https://doi.org/10.1093/bioinformatics/btz050
PMID: 30689784

Download and documentation

Source: https://github.com/nmdp-bioinformatics/g
rimm/tree/master/matching
Documentation: https://github.com/nmdp-bioinformatics/g
rimm/blob/master/matching/README.md
Home page: https://github.com/nmdp-bioinformatics/g
rimm

If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News

TOOLS

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched

Database of Bioinformatics Software Tools and Resources.

Ads

GRIMM

GRIMM

Topic

Details

Publications

Download and documentation

TOOLS

1. SNP Tools

2. GWAS Tools

3. Genotype Imputation Tools

4. MSA tools

5. CNV tools

6. WGA tools

7. RNA-seq tools

8. Proteomics Tools

9. Nucleic Acid Structure Analysis Tools

10. Nucleic Acid Sequence Analysis Tools

11. Sequence Logo Tools

12. In-house Software Tools