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Gimpute

Gimpute

A pipeline tool for genotype imputation The Gimpute algorithm comprises of genetic variant updating, matching, liftover, quality control, alignment of variants to references, pre-phasing, imputation, and post-imputation quality control.

Topic

Population genetics

Details

  • Operation: Phasing; Quality control; Imputation
  • Software interface: Command-line uner interface; Library
  • Language: R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU GPL v3
  • Cost: Free
  • Version name: 1.1
  • Maturity: Stable
  • Credit: Deutsche Forschungsgemeinschaft
  • Contact: emanuel.schwarz _at_ zi-mannheim.de
  • Collection: -

Publications

Chen J, Lippold D, Frank J, Rayner W, Meyer-Lindenberg A, Schwarz E "Gimpute: an efficient genetic data imputation pipeline." Bioinformatics. 2019 Apr 15;35(8):1433-1435. https://doi.org/10.1093/bioinformatics/bty814
PMID: 30239591

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