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A web-based tool for HLA allele imputation using HIBAG algorithm (see 'links'). The HLA-IMPUTER currently has the following reference panels: Han Chinese, Pan Asian, European, and multiethnic.


Population genetics


  • Operation: Imputation
  • Input: BED, FAM, BIM
  • Output: -
  • Software interface: Web user interface
  • Language: R shiny
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Stable
  • Credit: The Research Grant Council of Hong Kong
  • Contact: WanLing Yang yangwl _at_
  • Collection: -


Shen JJ, Yang C, Wang YF, Wang TY, Guo M, Lau YL, Zhang X, Sheng Y, Yang W "HLA-IMPUTER: an easy to use web application for HLA imputation and association analysis using population-specific reference panels." Bioinformatics. 2019 Apr 1;35(7):1244-1246.
PMID: 30169743

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