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Hap-seqX
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Hap-seqX

A tool to haplotype phasing and genotype imputation. The Hap-seqX Algorithm uses a combination of Dynamic Programming and a hidden Markov Model.



Hap-seqX

A tool to haplotype phasing and genotype imputation. The Hap-seqX Algorithm uses a combination of Dynamic Programming and a hidden Markov Model.

Topic

Population genetics

Details

  • Operation: Phasing; Imputation
  • Software interface: Command-line user interface
  • Language: Java
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
    • Cost: -
  • Version name: -
    • Maturity: Legacy
  • Credit: -
  • Contact: D He dhe _at_ us.ibm.com | E Eskin eeskin _at_ cs.ucla.edu
  • Collection: -

Publications

He D, Eskin E "Hap-seqX: expedite algorithm for haplotype phasing with imputation using sequence data." Gene. 2013 Apr 10;518(1):2-6. https://doi.org/10.1016/j.gene.2012.11.093
PMID: 23269365


Download and documentation

Currently not available or not maintained.







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