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ImpG-Summary

ImpG-Summary

A tool for genotype imputation using. The ImpG-Summary algorithm uses Gaussian imputation with summary association statistics.

Topic

Statistics and probability; GWAS study; Population genomics

Details

  • Operation: Sequence analysis; Statistical calculation
  • Input: 1000 Genomes reference haplotypes; summary association statistics
  • Output: summary association statistics for 1000 Genomes variants
  • Software interface: Command-line user interface
  • Language: -
  • Operating system: Linux
  • License: Other
  • Cost: Free for non-commercial use
  • Version name: 1.0
  • Credit: National Institutes of Health (NIH)
  • Contact: Bogdan Pasaniuc bpasaniuc _at_ mednet.ucla.edu | Alkes L. Price aprice _at_ hsph.harvard.edu
  • Collection: -

Publications

Pasaniuc B, Zaitlen N, Shi H, Bhatia G, Gusev A, Pickrell J, Hirschhorn J, Strachan DP, Patterson N, Price AL "Fast and accurate imputation of summary statistics enhances evidence of functional enrichment." Bioinformatics. 2014 Oct 15;30(20):2906-14. Epub 2014 Jul 1. https://doi.org/10.1093/bioinformatics/btu416
PMID: 24990607
PMCID: PMC4184260

Download and documentation

Currently not available or not maintained.


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