MaCH is a tool for genotype imputation and haplotyping using WGS sequence data. The MaCH algorithm uses a Markov chain approach and represents sampled chromosomes as mosaics of each other.
Genotype and phenotype; Quantitative genetics
Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR "MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes." Genet Epidemiol. 2010 Dec;34(8):816-34. https://doi.org/10.1002/gepi.20533
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