NPUTE is a tool for genotype imputation. The NPUTE algorithm uses the K-nearest-neighbor (KNN) over any size of sliding haplotype window method, a mismatch accumulator array (MAA). NPUTE also estimates the imputation accuracy by inference of known SNP values when left out.
Population genetics
Roberts A, McMillan L, Wang W, Parker J, Rusyn I, Threadgill D "Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows." Bioinformatics. 2007 Jul 1;23(13):i401-7. https://doi.org/10.1093/bioinformatics/btm220
PMID: 17646323
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