SHAPEIT (Segmented HAPlotype Estimation and Imputation Tool) is a tool to estimate haplotypes. The SHAPEIT algorithm uses data from unrelated individuals or small families and scales linearly with he number of single-nucleotide polymorphisms (SNPs) and haplotypes.
Genotype and phenotype; Genotyping experiment
Delaneau O, Marchini J, Zagury JF "A linear complexity phasing method for thousands of genomes." Nat Methods. 2011 Dec 4;9(2):179-81. https://doi.org/10.1038/nmeth.1785
PMID: 22138821
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