STITCH

A tool for genotype imputation. The STITCH algorithm works without reference panels and models chromosomes as a mosaic of unknown founders or ancestral haplotypes.

Topic

Population genetics

Details

Operation: Imputation
Input: BAM, VCF
Output: -
Software interface: Command-line user interface; Library
Language: R
Operating system: Linux; Mac OS X; Microsoft Windows
License: GNU General Public License v3

Cost

Version name: 1.6.2

Maturity:

Credit: Wellcome Trust
Contact: Robert W. Davies rwdavies _at_ well.ox.ac.uk
Collection: -

Publications

Davies RW, Flint J, Myers S, Mott R "Rapid genotype imputation from sequence without reference panels." Nat Genet. 2016 Aug;48(8):965-969. https://doi.org/10.1038/ng.3594
PMID: 27376236
PMCID: PMC4966640

Download and documentation

Source: https://github.com/rwdavies/STITCH
Documentation: https://github.com/rwdavies/STITCH/blob/
master/README.md
Home page: https://myersgroup.github.io/software.ht
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STITCH

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Download and documentation

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