For better experience, turn on JavaScript!

SparRec
Home » Tools » Genotype imputation Tools and Software » SparRec

SparRec

A tool for genotype imputation. The SparRec (SPARse RECovery) algorithm uses low-rank matrix completion with a novel co-clustering factorization.



SparRec

A tool for genotype imputation. The SparRec (SPARse RECovery) algorithm uses low-rank matrix completion with a novel co-clustering factorization.

Topic

Population genetics

Details

  • Operation: Imputation
  • Software interface: Command-line user interface
  • Language: Matlab
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: National Natural Science Foundation of China, Hong Kong Research Grants Council General Research Fund, National Science Foundation, he National Institute of Health. he National Institute of General Medical Sciences, the National Center for Research Resources.
  • Contact: jcausey _at_ astate.edu | Shuzhong Zhang zhangs _at_ umn.edu | Xiuzhen Huang xhuang _at_ astate.edu
  • Collection: -

Publications

Jiang B, Ma S, Causey J, Qiao L, Hardin MP, Bitts I, Johnson D, Zhang S, Huang X "SparRec: An effective matrix completion framework of missing data imputation for GWAS." Sci Rep. 2016 Oct 20;6:35534. https://doi.org/10.1038/srep35534
PMID: 27762341
PMCID: PMC5071878


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads