ISPAlign (Intermediate Sequence Profile Alignment) is a multiple sequence alignment program that incorporates an improvement to ProbCons’ HMM algorithm by extending it to use intermediate sequence profiles and structure predictions.
Genomics; Sequencing; Sequence analysis
Lu Y, Sze SH "Multiple sequence alignment based on profile alignment of intermediate sequences." J Comput Biol. 2008 Sep;15(7):767-77. https://doi.org/10.1089/cmb.2007.0132
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