KMAD is a software package specifically designed to construct multiple sequence alignments (MSAs) of so-called intrinsically disordered proteins (IDPs). IDPs differ from globular proteins by lacking tertiary structure and by having lower sequence conservation. The Authors provide both stand-alone and web server versions.
Phylogeny; Sequence analysis; Nucleic acid sites, features and motifs; Nucleic acid structure analysis; Sequence sites, features and motifs
Lange J, Wyrwicz LS, Vriend G "KMAD: knowledge-based multiple sequence alignment for intrinsically disordered proteins." Bioinformatics. 2016 Mar 15;32(6):932-6. https://doi.org/10.1093/bioinformatics/btv663
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