Kalign

Kalign is a fast and accurate multiple sequence alignment algorithm of prtotein RNA, and DNA sequences.

Topic

Proteomics; Genomics

Details

Operation: Multiple sequence alignment
Input: Sequence in FASTA, MSF, ClustalW, Stockholm, Macsim, Swissprot and Swissprot-xml formats
Output: -
Software interface: Web user interface
Language: C
Operating system: Linux; Mac OS X; Microsoft Windows
License: GNU GPL v2

Cost

Version name: 2

Maturity:

Credit: -
Contact: oliver.frings _at_ sbc.su.se
Collection: -

Publications

Lassmann T, Erik LL Sonnhammer "Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment." Nucleic Acids Research, 34:W596-W599 https://doi.org/10.1093/nar/gkl191
PMID: 16845078
PMCID: PMC1538774

Download and documentation

Source: http://msa.sbc.su.se/cgi-bin/msa.cgi
Documentation: http://msa.sbc.su.se/cgi-bin/msa.cgi
Home page: http://msa.sbc.su.se

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Kalign

Kalign

Topic

Details

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Download and documentation

TOOLS

1. SNP Tools

2. GWAS Tools

3. Genotype Imputation Tools

4. MSA tools

5. CNV tools

6. WGA tools

7. RNA-seq tools

8. Proteomics Tools

9. Nucleic Acid Structure Analysis Tools

10. Nucleic Acid Sequence Analysis Tools

11. Sequence Logo Tools

12. In-house Software Tools