MARS is a multiple sequence alignment (MSA) tool specifically designed for the alignment of sequences from circular genomes, such as mitochondria and viral genome sequences.
Sequence analysis; Phylogeny
Lorraine A. K. Ayad, Solon P. Pissis "MARS: improving multiple circular sequence alignment using refined sequences" BMC Genomics201718:86 https://doi.org/10.1186/s12864-016-3477-5
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