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MSA at BYU

MSA at BYU

Enhanced multiple sequence alignment (MSA) software at Brigham Young University, Computer Science Department. This software uses hardware acceleration: GPU, FPGA, and Cell BE.

Topic

Phylogeny; Sequence analysis; Nucleic acid sites, features and motifs; Nucleic acid structure analysis; Sequence sites, features and motifs

Details

  • Operation: Multiple sequence alignment
  • Input: FASTA
  • Output: -
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: Public domain
  • Cost: Free
  • Version name: 3.8.31b
  • Credit: -
  • Contact: Scott Lloyd ude.uyb _at_ ttocsg | Quinn O Snell ude.uyb.sc _at_ llens
  • Collection: -

Publications

Lloyd S, Snell QO "Accelerated large-scale multiple sequence alignment." BMC Bioinformatics. 2011 Dec 7;12:466. https://doi.org/10.1186/1471-2105-12-466
PMID: 22151470


Download and documentation








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