MSACompro is a tool to integrate tool predicted secondary structure, residue contact information, and relative solvent accessibility into a posterior probability for multiple sequence alignment (MSA) software, such as MSAProbs, ProbCons, Probalign, T-coffee, MAFFT, and MUSCLE.
Phylogeny; Sequence analysis; Nucleic acid sites, features and motifs; Nucleic acid structure analysis; Sequence sites, features and motifs
Deng X, Cheng J "MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts." BMC Bioinformatics. 2011 Dec 14;12:472. https://doi.org/10.1186/1471-2105-12-472
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