Multi-LAGAN

Multi-LAGAN is a tool for multiple global alignments of genomic sequences, a part of the Lagan Tool Toolkit and based on CHAOS local alignment tool.
Alternative name: MLAGAN

Topic

Genomics; Nucleic acid structure analysis; Comparative genomics

Details

Operation: Multiple sequence alignment
Input: FASTA; text; tree
Output: FASTA
Software interface: Web user interface; command-line user interface
Language: C;Perl
Operating system: Linux; Mac OS X
License: GNU GPL v2+

Cost

Version name: -

Maturity:

Credit: NSF Graduate Fellowship;Howard Hughes Medical Institute predoctoral fellowship;The National Human Genome Research Institute
Contact: lagan _at_ cs.stanford.edu
Collection: LAGAN TOOLKIT

Publications

Brudno M, Do CB, Cooper GM, Kim MF, Davydov E; NISC Comparative Sequencing Program, Green ED, Sidow A, Batzoglou S "LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA." Genome Res. 2003 Apr;13(4):721-31. Epub 2003 Mar 12. https://doi.org/10.1101/gr.926603
PMID: 12654723
PMCID: PMC430158

Download and documentation

Source: http://lagan.stanford.edu/lagan_web/laga
n20.tar.gz
Home page: http://genome.lbl.gov/vista/lagan/submit
.shtml
Links: http://lagan.stanford.edu/lagan_web/inde
x.shtml

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Multi-LAGAN

Multi-LAGAN

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