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Multi-LAGAN is a tool for multiple global alignments of genomic sequences, a part of the Lagan Tool Toolkit and based on CHAOS local alignment tool.
Alternative name: MLAGAN


Genomics; Nucleic acid structure analysis; Comparative genomics


  • Operation: Multiple sequence alignment
  • Input: FASTA; text; tree
  • Output: FASTA
  • Software interface: Web user interface; command-line user interface
  • Language: C;Perl
  • Operating system: Linux; Mac OS X
  • License: GNU GPL v2+
  • Cost: Free
  • Version name: -
  • Maturity: Mature
  • Credit: NSF Graduate Fellowship;Howard Hughes Medical Institute predoctoral fellowship;The National Human Genome Research Institute
  • Contact: lagan _at_
  • Collection: LAGAN TOOLKIT


Brudno M, Do CB, Cooper GM, Kim MF, Davydov E; NISC Comparative Sequencing Program, Green ED, Sidow A, Batzoglou S "LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA." Genome Res. 2003 Apr;13(4):721-31. Epub 2003 Mar 12.
PMID: 12654723
PMCID: PMC430158

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