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OD-seq
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OD-seq

OD-seq is a software program for detecting outliers in multiple sequence alignments (MSA). It works by finding sequences with an inconsistent average distance to sequences present in the multiple alignment.



OD-seq

OD-seq is a software program for detecting outliers in multiple sequence alignments (MSA). It works by finding sequences with an inconsistent average distance to sequences present in the multiple alignment.

Topic

Sequence analysis

Details

  • Operation: Sequence comparison; Multiple sequence alignment; validation
  • Input: FASTA
  • Output: -
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: peter.jehl _at_ ucdconnect.ie
  • Collection: -

Publications

Jehl P, Sievers F, Higgins DG "OD-seq: outlier detection in multiple sequence alignments" BMC Bioinformatics. 2015 Aug 25;16:269 https://doi.org/10.1186/s12859-015-0702-1
PMID: 26303676
PMCID: PMC4548304


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