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PRANK

PRANK

A creation of multiple alignments representing structural homology and evolutionary homology, require separate approaches. PRANK is designed for construction of multiple alignments reflecting the evolutionary homology and phylogenetic information to handle insertions and deletions.

Topic

Sequence analysis

Details

  • Operation: Sequence comparison; Multiple sequence alignment
  • Input: FASTA
  • Output: FASTA; HSAML
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v2
  • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: ari.loytynoja _at_ helsinki.fi
  • Collection: EBI Training Tools

Publications

Löytynoja A "Phylogeny-aware alignment with PRANK." Methods Mol. Biol. 2014;1079 https://doi.org/10.1007/978-1-62703-646-7_10
PMID: 24170401


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