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PnpProbs

PnpProbs

PnpProbs is a multiple sequence alignment (MSA) tool. It operates by assigning sequences into two, distantly and "normally" related, groups and uses a guide tree solely for "normally" related sequences. For distantly related sequences, it applies a non-progressive approach to generate a multiple sequence alignment (MSA).

Topic

Sequence analysis

Details

  • Operation: Multiple sequence alignment
  • Input: FASTA; CLUSTALW
  • Output: FASTA
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: GRF Grant HKU-716412E, GRF Grant HKU-713512E.
  • Contact: YE Yongtao ytye _at_ cs.hku.hk
  • Collection: -

Publications

Ye Y, Lam TW, Ting HF "PnpProbs: a better multiple sequence alignment tool by better handling of guide trees." BMC Bioinformatics. 2016 Aug 31;17 Suppl 8:285. https://doi.org/10.1186/s12859-016-1121-7
PMID: 27585754


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