Probalign is a multiple sequence alignment (MSA) software that uses a partition function to estimate posterior alignment probabilities. The Authors claim Probalign to be more accurate than Probcons, MAFFT, and MUSCLE.
Phylogeny; Sequence analysis; Nucleic acid sites, features and motifs; Nucleic acid structure analysis; Sequence sites, features and motifs
Roshan U, Livesay DR "Probalign: multiple sequence alignment using partition function posterior probabilities." Bioinformatics. 2006 Nov 15;22(22):2715-21. https://doi.org/10.1093/bioinformatics/btl472
PMID: 16954142
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