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Multiple sequence alignment of proteins sequences, using k-partite graph. The algorithm is independent of thr order of sequences.




  • Operation: Multiple alignment; Alignment; Analysis; Sequence alignment; Multiple sequence alignment
  • Software interface: Command-line user interface
  • Language: C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: -
  • Collection: -


Zhang X, Kahveci T "QOMA: quasi-optimal multiple alignment of protein sequences." Bioinformatics 2007 Jan;23(2): 162-168
PMID: 17121778

Zhang X, Kahveci T "QOMA2: Optimizing the alignment of many sequences." 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Zhang X, Kahveci T "A NEW APPROACH FOR ALIGNMENT OF MULTIPLE PROTEINS" Biocomputing 2006, pp. 339-350

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