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QOMA

QOMA

Multiple sequence alignment of proteins sequences, using k-partite graph. The algorithm is independent of thr order of sequences.

Topic

Sequences

Details

  • Operation: Multiple alignment; Alignment; Analysis; Sequence alignment; Multiple sequence alignment
  • Software interface: Command-line user interface
  • Language: C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: -
  • Collection: -

Publications

Zhang X, Kahveci T "QOMA: quasi-optimal multiple alignment of protein sequences." Bioinformatics 2007 Jan;23(2): 162-168 https://doi.org/10.1093/bioinformatics/btl590
PMID: 17121778


Zhang X, Kahveci T "QOMA2: Optimizing the alignment of many sequences." 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering. https://doi.org/10.1109/BIBE.2007.4375649


Zhang X, Kahveci T "A NEW APPROACH FOR ALIGNMENT OF MULTIPLE PROTEINS" Biocomputing 2006, pp. 339-350 https://doi.org/10.1142/9789812701626_0031


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