Multiple sequence alignment of proteins sequences, using k-partite graph. The algorithm is independent of thr order of sequences.
Zhang X, Kahveci T "QOMA: quasi-optimal multiple alignment of protein sequences." Bioinformatics 2007 Jan;23(2): 162-168 https://doi.org/10.1093/bioinformatics/btl590
Zhang X, Kahveci T "QOMA2: Optimizing the alignment of many sequences." 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering. https://doi.org/10.1109/BIBE.2007.4375649
Zhang X, Kahveci T "A NEW APPROACH FOR ALIGNMENT OF MULTIPLE PROTEINS" Biocomputing 2006, pp. 339-350 https://doi.org/10.1142/9789812701626_0031
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