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Stacatto is a multiple sequence alignment (MSA) tool that combines the use of three-dimensional structure alignment probabilities and standard amino acid substitution probabilities. Available from the Authors.


Nucleic acid structure analysis; Sequencing; Sequence analysis


  • Operation: Multiple sequence alignment; Structure alignment
  • Software interface: Command-line user interface
  • Language: -
  • Operating system: Linux
  • License: Not stated
  • Cost: -
  • Version name: -
  • Credit: Israel Science Foundation;The Hermann Minkowski-Minerva Center for Geometry at Tel Aviv University;The National Cancer Institute, National Institutes of Health
  • Contact: ppdock _at_ max.shatsky _at_
  • Collection: -


Shatsky M, Nussinov R, Wolfson HJ "Optimization of multiple-sequence alignment based on multiple-structure alignment." Proteins. 2006 Jan 1;62(1):209-17.
PMID: 16294339

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