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A java-based application that provides unique MSA viewers. Users can directly compare multiple MSAs and evaluate where the MSAs agree (are consistent) or disagree (are inconsistent).


Sequence analysis; Nucleic acid structure analysis; Sequencing


  • Operation: Visualisation; sequence visualisation; structure visualisation; comparison; calculation; nucleic acid property calculation
  • Software interface: Desktop user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: anderson _at_ | corystrope$ | emoriyama2 _at_
  • Collection: -


Anderson CL, Strope CL, Moriyama EN. "SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation" BMC Bioinformatics. 2011 May 21;12:184.
PMID: 21600033
PMCID: PMC3133551

Download and documentation

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