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A web-based tool to align transmembrane proteins using Wu-Manber string matching algorithm. The tool can visualize multiple sequence alignments in varied color schemes.


Sequencing; Sequence analysis; Nucleic acid structure analysis; Membrane and lipoproteins


  • Operation: Multiple sequence alignment
  • Input: FASTA format protein sequences
  • Output: -
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Stable
  • Credit: -
  • Contact: ashutosh.singh _at_;bb284 _at_;gs959 _at_
  • Collection: -


Bhat B, Ganai NA, Andrabi SM, Shah RA, Singh A "TM-Aligner: Multiple sequence alignment tool for transmembrane proteins with reduced time and improved accuracy." Sci Rep. 2017 Oct 2;7(1):12543.
PMID: 28970546
PMCID: PMC5624947

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