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TM-Aligner
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TM-Aligner

A web-based tool to align transmembrane proteins using Wu-Manber string matching algorithm. The tool can visualize multiple sequence alignments in varied color schemes.



TM-Aligner

A web-based tool to align transmembrane proteins using Wu-Manber string matching algorithm. The tool can visualize multiple sequence alignments in varied color schemes.

Topic

Sequencing; Sequence analysis; Nucleic acid structure analysis; Membrane and lipoproteins

Details

  • Operation: Multiple sequence alignment
  • Input: FASTA format protein sequences
  • Output: -
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
    • Maturity: Stable
  • Credit: -
  • Contact: ashutosh.singh _at_ snu.edu.in;bb284 _at_ snu.edu.in;gs959 _at_ snu.edu.in
  • Collection: -

Publications

Bhat B, Ganai NA, Andrabi SM, Shah RA, Singh A "TM-Aligner: Multiple sequence alignment tool for transmembrane proteins with reduced time and improved accuracy." Sci Rep. 2017 Oct 2;7(1):12543. https://doi.org/10.1038/s41598-017-13083-y
PMID: 28970546
PMCID: PMC5624947


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