VerAlign is a web-based tool to compare two multiple sequence alignments (MSAs). It uses SPdist scoring scheme which measures a distance between mismatched amino acid pairs. Available from the Authors upon request.
Phylogeny; Sequence analysis; Nucleic acid sites, features and motifs; Nucleic acid structure analysis; Sequence sites, features and motifs
Bawono P, van der Velde A, Abeln S, Heringa J "Quantifying the displacement of mismatches in multiple sequence alignment benchmarks." PLoS One. 2015 May 19;10(5):e0127431. https://doi.org/10.1371/journal.pone.0127431
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