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VerAlign

VerAlign

VerAlign is a web-based tool to compare two multiple sequence alignments (MSAs). It uses SPdist scoring scheme which measures a distance between mismatched amino acid pairs. Available from the Authors upon request.

Topic

Phylogeny; Sequence analysis; Nucleic acid sites, features and motifs; Nucleic acid structure analysis; Sequence sites, features and motifs

Details

  • Operation: Multiple sequence alignment
  • Input: MSF; FASTA
  • Output: -
  • Software interface: Web user interface
  • Language: C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Stable
  • Credit: -
  • Contact: p.bawono _at_ vu.nl | vsimoss _at_ cs.vu.nl | heringa _at_ cs.vu.nl
  • Collection: -

Publications

Bawono P, van der Velde A, Abeln S, Heringa J "Quantifying the displacement of mismatches in multiple sequence alignment benchmarks." PLoS One. 2015 May 19;10(5):e0127431. https://doi.org/10.1371/journal.pone.0127431
PMID: 25993129


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