EDNA (Energy Based Multiple Sequence Alignment) is a multiple sequence alignment (MSA) program for aligning transcription factor binding site sequences (TFBSs). The novelty of this software is the scoring using a thermodynamically generated null hypothesis. The method is well suited for aligning sequences that are often not related. Alternative names: Energy Based Multiple Sequence Alignment, EDNA
Phylogeny; Sequence analysis; Nucleic acid sites, features and motifs; Nucleic acid structure analysis; Sequence sites, features and motifs OPERATION=Multiple sequence alignment
Salama RA, Stekel DJ "A non-independent energy-based multiple sequence alignment improves prediction of transcription factor binding sites." Bioinformatics. 2013 Nov 1;29(21):2699-704. https://doi.org/10.1093/bioinformatics/btt463
PMID: 23990411
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads