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BARNACLE

BARNACLE

BARNACLE is a library to predict 3D RNA structures given a nucleotide sequence.

Topic

Nucleic acid structure analysis

Details

  • Operation: RNA structure prediction
  • Software interface: Library
  • Language: Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v2
  • Cost: Free
  • Version name: 0.21
  • Credit: Carlsbergs Mindelegat, the Danish Research Council for Technology and Production Sciences, the Danish National Research Foundation, the University of Copenhagen
  • Contact: thamelry _at_ binf.ku.dk
  • Collection: -

Publications

Frellsen J, Moltke I, Thiim M, Mardia KV, Ferkinghoff-Borg J, Hamelryck T "A probabilistic model of RNA conformational space." PLoS Comput. Biol. 2009; 5(6):e1000406 https://doi.org/10.1371/journal.pcbi.1000406
PMID: 19543381
PMCID: PMC2691987


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