NUCwave is a tool to create nucleosome occupation maps from Chromatin digestion with micrococcal nuclease (MNase-seq), Chemical cleavage of chromatin (CC-seq), and Chromatin immunoprecipitation (ChIP-seq) and fragmentation by sonication. The NUCwave algorithm can use both single-read and paired-end sequencing protocols.
DNA; Nucleic acid structure analysis; DNA binding sites
Quintales L, Vázquez E, Antequera F "Comparative analysis of methods for genome-wide nucleosome cartography." Brief. Bioinformatics 2015; 16(4):576-87 https://doi.org/10.1093/bib/bbu037
PMID: 25296770
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