Non-B DB is an online database that contains non-B DNA forming sequence motifs. The Non-B DB includes predictions for Z-DNA, quadruplex-forming motifs, mirror repeats, inverted repeats, and direct repeats with subsets of cruciforms, triplex, and slipped structures.
The database also contains disease-associated motifs, such as short tandem repeats and homo(purine•pyrimidine) tracts.
The query results link to the UCSC browser and GBrowse-based genomic viewers.
Structure prediction; DNA; DNA polymorphism; Genetic variation; Structure analysis
Cer RZ, Bruce KH, Mudunuri US, Yi M, Volfovsky N, Luke BT, Bacolla A, Collins JR, Stephens RM "Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes." Nucleic Acids Res. 2011; 39(Database issue):D383-91 https://doi.org/10.1093/nar/gkq1170
PMID: 21097885
PMCID: PMC3013731
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