Repeat Enrichment Estimator is a web-based tool to estimate the enrichment of repetitive elements from short-read sequencing data. The Repeat Enrichment Estimator processes simple ChIP-control paired and large datasets. The web site contains assemblies for Human hs36, Mouse mm9, Drosophila dm3.
Sequence composition, complexity and repeats
Day DS, Luquette LJ, Park PJ, Kharchenko PV "Estimating enrichment of repetitive elements from high-throughput sequence data." Genome Biol, 2010 https://doi.org/10.1186/gb-2010-11-6-r69
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