For better experience, turn on JavaScript!

Repeat Enrichment Estimator
Home » Tools » DNA Sequence Analysis Tools » Repeat Enrichment Estimator

Repeat Enrichment Estimator

Repeat Enrichment Estimator is a web-based tool to estimate the enrichment of repetitive elements from short-read sequencing data. The Repeat Enrichment Estimator processes simple ChIP-control paired and large datasets. The web site contains assemblies for Human hs36, Mouse mm9, Drosophila dm3.



Repeat Enrichment Estimator

Repeat Enrichment Estimator is a web-based tool to estimate the enrichment of repetitive elements from short-read sequencing data. The Repeat Enrichment Estimator processes simple ChIP-control paired and large datasets. The web site contains assemblies for Human hs36, Mouse mm9, Drosophila dm3.

Topic

Sequence composition, complexity and repeats

Details

  • Operation: Repeat sequence analysis
  • Software interface: Web user interface
  • Language: C, R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: Daniel S Day dsday _at_ MIT.EDU | Lovelace J Luquette Lovelace_Luquette _at_ hms.harvard.edu | Peter J Park Peter J Park | Peter V Kharchenko peter.kharchenko _at_ post.harvard.edu
  • Collection: -

Publications

Day DS, Luquette LJ, Park PJ, Kharchenko PV "Estimating enrichment of repetitive elements from high-throughput sequence data." Genome Biol, 2010 https://doi.org/10.1186/gb-2010-11-6-r69
PMID: 20584328
PMCID: PMC2911117


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads