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Repeat Enrichment Estimator

Repeat Enrichment Estimator

Repeat Enrichment Estimator is a web-based tool to estimate the enrichment of repetitive elements from short-read sequencing data. The Repeat Enrichment Estimator processes simple ChIP-control paired and large datasets. The web site contains assemblies for Human hs36, Mouse mm9, Drosophila dm3.

Topic

Sequence composition, complexity and repeats

Details

  • Operation: Repeat sequence analysis
  • Software interface: Web user interface
  • Language: C, R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: Daniel S Day dsday _at_ MIT.EDU | Lovelace J Luquette Lovelace_Luquette _at_ hms.harvard.edu | Peter J Park Peter J Park | Peter V Kharchenko peter.kharchenko _at_ post.harvard.edu
  • Collection: -

Publications

Day DS, Luquette LJ, Park PJ, Kharchenko PV "Estimating enrichment of repetitive elements from high-throughput sequence data." Genome Biol, 2010 https://doi.org/10.1186/gb-2010-11-6-r69
PMID: 20584328
PMCID: PMC2911117


Download and documentation




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