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SPuNC
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SPuNC

SPuNC (Structure Prediction using Nucleotide Composition) is a tool to predict RNA structures. The SPuNC algorithm uses evolutionary patterns of nucleotide composition. Note that the code is not maintained anymore.



SPuNC

SPuNC (Structure Prediction using Nucleotide Composition) is a tool to predict RNA structures. The SPuNC algorithm uses evolutionary patterns of nucleotide composition. Note that the code is not maintained anymore.

Topic

RNA structure; Structure prediction; RNA; RNA structure prediction

Details

  • Operation: Structure prediction; RNA structure prediction; Prediction
  • Software interface: Command-line user interface; Web user interface
  • Language: Python
  • Operating system: Linux
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: The Centre for Medical Systems Biology (CMSB); the Netherlands Genomics Initiative, funded by the Dutch government.
  • Contact: ibivu _at_ few.vu.nl | Sandra.Smit _at_ wur.nl
  • Collection: -

Publications

Smit S, Knight R, Heringa J "RNA structure prediction from evolutionary patterns of nucleotide composition." Nucleic Acids Res. 2009; 37(5):1378-86 https://doi.org/10.1093/nar/gkn987
PMID: 19129237
PMCID: PMC2655677


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