Traveler is a tool to visualize RNA secondary structures. The Traveler algorithm takes a target and a template structure as inputs. It computes tree representations and calculates tree edit distances with layout adjustment operations to transform the template layout into the target layout.
RNA-seq; Nucleic acid structure analysis; Structure prediction
Elias R, Hoksza D "TRAVeLer: a tool for template-based RNA secondary structure visualization." BMC Bioinformatics. 2017 Nov 15;18(1):487. https://doi.org/10.1186/s12859-017-1885-4
PMID: 29141608
PMCID: PMC5688744
Richard Eliáš, David Hoksza "RNA Secondary Structure Visualization Using Tree Edit Distance" IJBBB 2016 Vol.6(1): 9-17 ISSN: 2010-3638 https://doi.org/10.17706/ijbbb.2016.6.1.9-17
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