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ValFold
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ValFold

ValFold is a tool to predict DNA secondary structures. The ValFold algorithm uses unique aptamer properties and predicts canonical Watson-Crick pairs and G-G pairs from G-quadruplex structures applying the stem candidate selection algorithm.



ValFold

ValFold is a tool to predict DNA secondary structures. The ValFold algorithm uses unique aptamer properties and predicts canonical Watson-Crick pairs and G-G pairs from G-quadruplex structures applying the stem candidate selection algorithm.

Topic

DNA; Nucleic acid structure analysis; Nucleic acid structure analysis

Details

  • Operation: Nucleic acid structure analysis
  • Software interface: Graphical user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: 1.0.0
  • Credit: The Bio-oriented Technology ResearchAdvancement Institution (BRAIN)
  • Contact: akitom-jou _at_ mxf.nes.nec.co.jp
  • Collection: -

Publications

Akitomi J, Kato S, Yoshida Y, Horii K, Furuichi M, Waga I "ValFold: Program for the aptamer truncation process." Bioinformation 2011; 7(1):38-40 https://doi.org/10.6026/97320630007038
PMID: 21904437
PMCID: PMC3163931


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