For better experience, turn on JavaScript!

VarGibbs
Home » Tools » Nucleic Acid Structure Analysis Tools » VarGibbs

VarGibbs

VarGibbs Tool computes nearest-neighbor DNA entropies and initiation parameters from experimental melting temperatures. The VarGibbs algorithm is similar to the Peyrard-Bishop nearest-neighbor model.



VarGibbs

VarGibbs Tool computes nearest-neighbor DNA entropies and initiation parameters from experimental melting temperatures. The VarGibbs algorithm is similar to the Peyrard-Bishop nearest-neighbor model.

Topic

DNA; Structure analysis; Computational chemistry; Nucleic acid structure analysis

Details

  • Operation: Nucleic acid thermodynamic property calculation
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: CC BY-NC 3.0
    • Cost: Free
  • Version name: 2.2
  • Credit: Fundação de Amparo à Pesquisa do Estado de Minas Gerais (Fapemig), Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
  • Contact: gweberbh _at_ gmail.com
  • Collection: -

Publications

Weber G "Optimization method for obtaining nearest-neighbour DNA entropies and enthalpies directly from melting temperatures." Bioinformatics 2015; 31(6):871-7 https://doi.org/10.1093/bioinformatics/btu751
PMID: 25391397


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads