btwisted

btwisted tool computes the twisting in a B-DNA sequence. The algorithm takes a DNA sequence and uses uncomplicated arithmetic to calculate the sequence twist and its stacking energy.

Topic

Nucleic acid structure analysis

Details

Operation: Nucleic acid property calculation
Input: standard EMBOSS sequence query (also known as a USA)
Output: .btwisted
Software interface: Command-line interface
Language: C
Operating system: Linux; Mac OS X; Microsoft Windows
License: GPL-3.0

Cost

Version name: 6.4.0.0

Maturity:

Credit: -
Contact: emboss-bug _at_ emboss.open-bio.org
Collection: EMBOSS

Publications

Rice P, Longden I, Bleasby A "EMBOSS: the European Molecular Biology Open Software Suite." Trends Genet. 2000; 16(6):276-7 https://doi.org/10.1016/s0168-9525(00)02024-2
PMID: 10827456

Download and documentation

Source: http://emboss.sourceforge.net/download/
Documentation: http://emboss.open-bio.org/rel/rel6/apps
/btwisted.html
Home page: http://emboss.open-bio.org/rel/rel6/apps
/btwisted.html
Links: http://emboss.sf.net/docs/themes/Sequenc
eFormats.html

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btwisted

btwisted

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