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catRAPID signature

catRAPID signature

catRAPID signature is a web-based tool to calculate RNA-binding binding propensity and specific RNA-binding regions. The catRAPID algorithm uses Physico-chemical features to identify ribonucleoproteins and visualizes the results directly on the web page that are downloadable or forwardable to the catRAPID omics to predict RNA targets. The Authors have trained catRAPID signature on human proteins.

Topic

RNA; Nucleic acid sites, features and motifs; Nucleic acid structure analysis

Details

  • Operation: Protein sequence analysis
  • Input: FASTA
  • Output: -
  • Software interface: Web user interface
  • Language: Javascript;R;Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: The European Research Council under the European Unions Seventh Framework Programme - ERC grant, the Spanish Ministry of Economy and Competitiveness, Centro de Excelencia Severo Ochoa , FEDER funds (European Regional Development Fund), the MINECOs pre-doctoral grant Severo Ochoa.
  • Contact: gian.tartaglia _at_ crg.es | gian _at_ tartaglialab.com
  • Collection: -

Publications

Livi CM, Klus P, Delli Ponti R, Tartaglia GG "catRAPID signature: identification of ribonucleoproteins and RNA-binding regions." Bioinformatics 2016; 32(5):773-5 https://doi.org/10.1093/bioinformatics/btv629
PMID: 26520853
PMCID: PMC4795616


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