dnaMATE is a tool to calculate consensus melting and annealing temperatures for short DNA sequences of 16 to 30 nucleotides of length. The dnaMATE uses three independent thermodynamic data tables for the calculations, gives five separate approximations, a consensus temperature, and an expected melting temperature variation estimate. A stand-alone version is available.
Nucleic acid structure analysis; DNA
Panjkovich A, Norambuena T, Melo F "dnaMATE: a consensus melting temperature prediction server for short DNA sequences." Nucleic Acids Res. 2005; 33(Web Server issue):W570-2 https://doi.org/10.1093/nar/gki379
PMID: 15980538
PMCID: PMC1160140
Panjkovich A, Melo F "Comparison of different melting temperature calculation methods for short DNA sequences." Bioinformatics, 2005 https://doi.org/10.1093/bioinformatics/bti066
PMID: 15501913
PMCID: None
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