3V (Voss Volume Voxelator) is a tool to compute internal volumes from RNA and protein structures, such as deep clefts, channels, and cavities. The 3V algorithm computes the internal volumes using the differences between two rolling-probe solvent-excluded surfaces, probe radiuses, and solvent radiuses.
Imaging; Protein structural motifs and surfaces; RNA; Probes and primers; Nucleic acid structure analysis
Voss NR, Gerstein M "3V: cavity, channel and cleft volume calculator and extractor." Nucleic Acids Res. 2010; 38(Web Server issue):W555-62 https://doi.org/10.1093/nar/gkq395
PMID: 20478824
PMCID: PMC2896178
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